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Systematic Protein Annotation and Modeling
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Overview

Macromolecular structure determination is moving from a functionally driven initiative to include a genomically driven initiative (structural genomics) where structures are determined based on what is known from a target sequence alone. The resultant structures may be structurally and functionally uncharacterized. Systematic Protein Annotation and Modeling (SPAM) is a multi-institutional initiative to make better use of target sequences and structures. SPAM includes new algorithms for the study of sequence-sequence, sequence-structure and structure-structure and deployment of these methods in resources available to the community

 

The SPAM project is supported by the National Institutes of Heath (NIH) grant number GM63208 and is located within the Skaggs School of Pharmacy and Pharmaceutical Sciences and the San Diego Supercomputer Center (SDSC) at the University of California San Diego (UCSD), the Keck Graduate Institute (KGI) and the Burnham Institute (TBI).

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